Bioinformatics
Bioinformatics is our passion! We would love to analyse your data and deliver exactly the results you need.
With our proven expertise genomics data analysis we can help you to obtain high-quality results to get most out of your data.
Explore our services and solutions for amplicon, metagenomic or metatranscriptomics data or get in touch if you have any custom request of special analysis or bioinformatic software you need.
Amplicon
We offer different packages for processing of amplicon data. From standard processing to customized analysis, get the best out of your data.
Metagenomics
Metagenomic data processing requires expert knowledge and specialised hardware. We are here to help you.
Custom analysis and software
We offer custom analysis exactly the way you need it. If you have re-occuring analysis, we can create and automatized pipeline or create interactive analysis app.
For pricing and example projects, see the specific section.
Amplicon
Illumina data
Illumina short reads are used most often due to the high quality and the availability of standard processing pipelines. We offer different packages:
Basis package includes standard processing of 16S rRNA or 18S rRNA/ITS amplicon fragments using DADA2 and taxonomy assignment using the SILVA database or a BLAST based approach. An interactive document allows immediate and intuitive exploration of the results. For 50 or more samples the price is 5€ per sample, below 50 samples 7€ per sample.
Advanced package offers custom processing and analysis.
For more information, see here!
Nanopore data
Amplicon data from Nanopore sequencing is getting more and more common due to the possibility to sequence full length amplicon fragments. However, classical amplicon processing methods can not be applied due to the higher error frequencing. This makes clustering and dereplication of reads impossible and other computational methods have to be applied.
We benchmarked several tools and developed an optimized workflow. Prices for processing depend on the number of reads:
- 7€ per sample for less than 100,000 reads per sample
- 10€ per sample for more than 100,000 reads sample
Metagenomics
Metagenomic data processing and analysis involves the execution of several subsequent processing steps and often requires specialised hardware. With our proven experience and our infrastucture, your results are just a click away. Different packages offer the processing you need or the analysis you want:
The Base package offers data processing and delivers contigs, functionally annotated genes and complete MAGs.
We also offer processing of Metatranscriptomic data.
For information and the pricing, see here!
Custom analysis and software
Do you have a special request to analyse your sequencing data? Or do you need a specific software to solve re-occuring task? Let us know about your needs!
Custom analysis
Do you need a special typ of analysis. Maybe you need an analysis using a certain software package or do you need to reproduce a published analysis pipeline? Get in touch and we discuss the options!
Specific software or app
Do you have a specific analysis step that appear more frequently? Or do you want to optimize your workflow? We can support you automatising analysis.
We also have experience with interactive apps, especially built with R and Shiny. Get in touch to discuss how we can help!